2.18_Marker_SNPs.hmp.txt (947.01 MB)

2.18_Marker_SNPs.hmp.txt

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posted on 16.08.2020 by Waldiodio Seck, Davoud Torkamaneh, Francois Belzile

This constitutes a dense and exhaustive coverage of the soybean genome using a dual genotyping approach combining both GBS and WGS, for a core set of 137 Canadian soybean lines.The entire panel was characterized via 56K GBS-derived SNPs. A Canadian soybean reference panel (102 lines, of which 56 were also present in the association panel) of 4.3M WGS-derived SNPs was used to perform imputation of untyped loci in the first catalogue. This led to a final catalogue of 2.18M SNPs (MAF ≥ 0.05) for a mean density of 1 SNP every 435 bp across the soybean genome.

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SoyaGen: Improving yield and disease resistance in short-season soybean

Genome Canada

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