Figure_4.tif (347.74 kB)
Time for several k-mer counting tools to retrieve the counts of 9.7 m randomly chosen k-mers (y axis), plotted against the number of distinct k-mers in the data set being queried (x axis).
figure
posted on 2014-07-25, 03:13 authored by Qingpeng ZhangQingpeng Zhang, Jason PellJason Pell, Rosangela Canino-Koning, Adina Chuang Howe, C. Titus BrownC. Titus BrownBFCounter, DSK, Turtle, KAnalyze, and KMC do not support this functionality.
History
Usage metrics
Categories
Keywords
Computational biologygenome analysisGenomic databasesgeneticsgenomicsmolecular biologyMolecular biology techniquesSequencing techniquesGenome sequencingSequence analysisComputing methodscloud computingsoftware engineeringSoftware toolsk-mercountingtoolsretrievecountsrandomlychosenk-mersplottedqueried
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC