Fig_5.tif (391.78 kB)
In silico investigation of SNP variation and predicted gene models (MSU6.1) across the indica specific PUE locus on chromosome1, delimited by haplotype and linkage block to 7.247–7.343 Mb.
figure
posted on 2015-04-29, 04:28 authored by Matthias Wissuwa, Katsuhiko Kondo, Takuya Fukuda, Asako Mori, Michael T. Rose, Juan Pariasca-Tanaka, Tobias Kretzschmar, Stephan M. Haefele, Terry J. RoseThe location of SNP locations with most significant association to PUE is indicated. SNP patterns shown are based on 1479 accessions represented in the RiceVarMap database and indicate specific SNPs detected in accessions belonging to the rare high-PUE haplotype (HT1-7) group (haplotype frequence of 7.3%). A total of 550 SNPs are displayed, of which 332 SNPs cluster towards the downstream limit (red bar on top).
History
Usage metrics
Categories
Keywords
expression patternsInternal Phosphorus Utilization EfficiencyUnmasking Novel Locichromosome 11.chromosome 1 haplotypeRice Germplasmexpression analysisP uptakecoding regionsGWASpriority candidate genesplant P uptakegenotypic variationrice gene poolfertilizer price increasesInternal P utilization efficiencyrice varietiesplant growthPUEhydroponic systemchromosome 1
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC