In silico investigation of SNP variation and predicted gene models (MSU6.1) across the indica specific PUE locus on chromosome1, delimited by haplotype and linkage block to 7.247–7.343 Mb.

<p>The location of SNP locations with most significant association to PUE is indicated. SNP patterns shown are based on 1479 accessions represented in the RiceVarMap database and indicate specific SNPs detected in accessions belonging to the rare high-PUE haplotype (HT1-7) group (haplotype frequence of 7.3%). A total of 550 SNPs are displayed, of which 332 SNPs cluster towards the downstream limit (red bar on top).</p>