Haplotype analysis for main loci associated with PUE on chromosomes 1 (A), 4 (B), 11 (C), and 12 (D).

<p>Within haplotypes most significant SNPs highlighted in bold print and average PUE values of accessions belonging to respective haplotype are given. SNP alleles improving PUE are highlighted in green while negative alleles are highlighted grey. Linkage blocks for the respective subpopulation are indicated in blue above the haplotypes (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0124215#pone.0124215.s005" target="_blank">S5 Fig</a> for details on LD analysis).</p>