Genotype distribution among HAD (cases) and non-HAD (controls) HIV-1-infected patients for all polymorphisms tested.

1

Polymorphisms selected from earlier studies that tested for association between genotype and HAD.

2

In the case of APOE AA, AB and BB refer to no APO E4, one APO E4 allele and two APO E4 alleles, respectively.

3

SNPs selected from a previous study that found associations between these SNPs and HIV-1 replication in macrophages.

*Significant difference after correction for multiple testing (n = 12); Bonferroni threshold p = 4.2×10−3.