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Comparison of the time it takes for k-mer counting tools to calculate k-mer abundance histograms, with time (y axis, in seconds) against data set size (in number of reads, x axis).

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posted on 2014-07-25, 03:13 authored by Qingpeng Zhang, Jason PellJason Pell, Rosangela Canino-Koning, Adina Chuang Howe, C. Titus BrownC. Titus Brown

All programs executed in time approximately linear with the number of input reads.

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    Computational biologygenome analysisGenomic databasesgeneticsgenomicsmolecular biologyMolecular biology techniquesSequencing techniquesGenome sequencingSequence analysisComputing methodscloud computingsoftware engineeringSoftware toolstakesk-mercountingtoolsabundance

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