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XML4NGS : A XML-based description of a Next-Generation sequencing project allowing the generation of a ’Makefile’-driven workflow.

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posted on 2013-07-02, 10:01 authored by Pierre LindenbaumPierre Lindenbaum, Raluca Teusan, Solena LeScouarnec, Audrey Bihouée, Richard Redon

[in french] Poster presented at JOBIM2013 https://colloque.inra.fr/jobim2013/layout/set/print/Soumission2/Liste-des-soumissions-retenues-pour-une-presentation-sous-forme-d-affiche

XML4NGS is a schema describing a NGS experiment in XML. It provides a XSLT
stylesheet transforming the XML into a Makefile-driven workflow allowing a parallel analysis
(alignment, calling, annotation ... ) on a cluster.

 

 

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