Compressed (tgz) Vcf file containing a subset of high quality biallelic variant filtered out from the genotyping output file VQSR.vcf produced by GATK, when filtering for only variants corresponding to the best genotyping scored (Indicated with PASS). Population analysis measures (Dxy and Da) are performed on a second subset of this file after filtering genotypes according to allelic depth and genotyping quality with vcftools, with parameters: --minGQ 30 --minDP 10 --maf 0.001 . This filtered data set is used for figure 2C, and Figure S7.