Verification of DEGs using qRT-PCR.

(A)The line shows the differences in the expression levels resulting from RNA-seq in rice leaves infected with the GX01 T3SD and GX01 wild-type (WT) strains represented as log2(FPKMT3SD/FPKMWT). The columns show expression level differences based on qRT-PCR assay results (three biological replicates). (B) The line shows the differences in the expression levels resulting from RNA-seq and displays the fold changes of GX01 growing in planta compared to in media represented as log2(FPKM in planta/FPKM in media). The columns show expression level differences in the qRT-PCR assay results (three biological replicates). All qPCR data were processed using the 2^(-ΔΔC(t)) method.