Tiee_etal-Figure S3 from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time
2018-01-24T13:24:26Z (GMT) by
Figure S3. Comparison of Sanger sequencing verification results to fluorescence levels of HRM putative positives. Rate of fluorescence or the intensity of the Tm peak as calculated through analysis of HRM melting curves acts as a proxy for copy number of PCR product (14). Black circles correspond to the G2R_G amplicon and red points to the G2R_WA amplicon. This figure compares the sensitivity of HRM to that of Sanger sequencing. HRM putative positives melting in the correct melting range are more likely to be verified by Sanger-sequencing if the copy number is higher. This restricts the positives to those that occur in higher copy number, avoiding wild contamination. An ANOVA rejects the null hypothesis that the mean Tm peak intensity of fluorescence for Sanger-sequenced positives is equal to the mean for Sanger-sequenced negatives (p < 2.2E-16, F = 190.7, df = 1).