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Supplementary Data for Hynes et al. (2016)

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posted on 2017-07-14, 17:36 authored by Olga ZhaxybayevaOlga Zhaxybayeva, Migun Shakya, Alexander P. Hynes, Andrew S. Lang
This data set contains sequences, sequence alignments and phylogenetic trees used in the bioinformatic analyses presented in:
Hynes AP, Shakya M, Mercer RG, Grüll MP, Bown L, Davidson F, Steffen E,
Matchem H, Peach ME, Berger T, Grebe K, Zhaxybayeva O, Lang AS. Functional and
Evolutionary Characterization of a Gene Transfer Agent's Multilocus "Genome". Mol
Biol Evol. 2016 Oct;33(10):2530-43. Epub 2016 Jun 24.

doi: 10.1093/molbev/msw125. PubMed PMID: 27343288;
PubMed Central PMCID: PMC5026251.

The contents of four files:

1) 32core_genes.zip: amino acid sequences of 32 gene families (in FASTA format) that were used to reconstruct Rhodobacterales phylogeny (shown in Figure 6 in the article.)
2) rcc00171_tree.zip: alignment (in FASTA format) and tree file (in NEWICK format) for the tree shown in Figure 7B.
3) gtaNphage_teeNafa.zip: alignments (in FASTA format) and tree files (in NEWICK format) for all RcGTA genes and their phage homologs (trees are shown in Figures 7A and S2.)
4) RcGTA.zip: amino acid sequences of genes in the RcGTA genome. These are also available in GenBank.

Funding

NSERC 341561 to A.S.L.; NSF-DEB 1551674 to O.Z.

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