Supplemental Material for Snoeck et al., 2018

File S1 contains the CDS sequences of the <i>T. urticae</i> genome annotation of August 11, 2016. File S2 contains the protein sequences of the short-chain dehydrogenases of <i>T. urticae</i>, <i>M. occidentalis</i>, <i>D. melanogaster</i> and <i>H. sapiens</i> that were included in the phylogenetic analysis. File S3 contains the sequences of the full-length single PLAT domain proteins of <i>T. urticae</i>, <i>T. evansi</i>, <i>P. ulmi</i> and <i>P. citri</i> that were included in the phylogenetic analysis. Figure S1 shows the expression heatmaps of genes coding for group I and II SDRs and of group I and II single PLAT domain protein genes across the replicated <i>T. urticae</i> host plant populations (lima bean, soybean, cotton, tomato and maize). Table S1 contains the differential gene expression results of the <i>T. urticae</i> host plant populations. Table S2 shows the overlap between DEGs of the different <i>T. urticae</i> host plant populations. Table S3 shows the <i>k</i>-means clustering of the DEGs identified in the different host plant populations of <i>T. urticae</i>. Table S4 shows the OrthoMCL grouping of the <i>T. urticae</i> proteome. Table S5 contains the OrthoMCL enrichment results of the DEG sets of each<i> T. urticae</i> host plant population. Table S6 contains the significantly enriched GO terms in the DEG sets of the different host plant populations of <i>T. urticae</i>. Table S7 contains the short-chain dehydrogenase genes annotated in the <i>T. urticae</i> genome. Table S8 contains the single PLAT domain protein genes annotated in the <i>T. urticae</i> genome. <i>T. urticae</i> gene expression data are available at the Gene Expression Omnibus with accession numbers GSE50162, GSE80337 and GSE68708. <br>