Supplement 1. Source code for DOT test.

2016-08-05T03:14:40Z (GMT) by D. D. Ackerly D. W. Schwilk C. O. Webb

File List

readme.txt  - Instructions to install and run scripts
dot.R  - main R script for DOT test
picfixed.R  - R function required by DOT
trancml  - awk script that runs ancml and formats output for dot.R
phylo  - sample phylogeny file
traits  - sample traits file
dot.zip  - all files at once

Description

This set of scripts, written in R and awk, together with Schluter et al.'s ancml program, will run the DOT test presented in this publication. Sample files (phylo and traits) are also provided. See readme.txt for a full description and instructions for use.