Supplement 1. Matlab functions for fitting the models in Scenario 3.

dataset

posted on 2016-08-10, 03:03 authored by Jonas Knape, Panagiotis Besbeas, Perry de Valpine

File List

fitModel.m (MD5: dcf2f5a898ddf08cc71f14dbafabd124)

fullNLL.m (MD5: 514a14611653186dabcf5bff28bfa50f)

kalman.m (MD5: d1f7404cbf0f8bc9ecce730023f2a891)

Description

fitModel.m fits a data set simulated under Scenario 3.
fullNLL.m computes the likelihood for the full ML method.
kalman.m is an implementation of the kalman filter used by fitModel.

History

Usage metrics

Keywords

breeding bird survey abundance data Ovenbird process noise observation error Gompertz state-space model Kalman filter replicated sampling Environmental Science Ecology

Licence

CC0

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM