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Structural Examination of the Nickel Site in Chromatium vinosum Hydrogenase: Redox State Oscillations and Structural Changes Accompanying Reductive Activation and CO Binding†
journal contribution
posted on 2000-06-02, 00:00 authored by Gerard Davidson, Suranjan B. Choudhury, Zhijie Gu, Kurethara Bose, Winfried Roseboom, Simon P. J. Albracht, Michael J. MaroneyAn X-ray absorption spectroscopic study of structural changes occurring at the Ni site of
Chromatium vinosum hydrogenase during reductive activation, CO binding, and photolysis is presented.
Structural details of the Ni sites for the ready silent intermediate state, SIr, and the carbon monoxide
complex, SI−CO, are presented for the first time in any hydrogenase. Analysis of nickel K-edge energy
shifts in redox-related samples reveals that reductive activation is accompanied by an oscillation in the
electron density of the Ni site involving formally Ni(III) and Ni(II), where all the EPR-active states (forms
A, B, and C) are formally Ni(III), and the EPR-silent states are formally Ni(II). Analysis of XANES
shows that the Ni site undergoes changes in the coordination number and geometry that are consistent
with five-coordinate Ni sites in forms A, B, and SIu; distorted four-coordinate sites in SIr and R; and a
six-coordinate Ni site in form C. EXAFS analysis reveals that the loss of a short Ni−O bond accounts for
the change in coordination number from five to four that accompanies formation of SIr. A shortening of
the Ni−Fe distance from 2.85(5) Å in form B to 2.60(5) Å also occurs at the SI level and is thus associated
with the loss of the bridging O-donor ligand in the active site. Multiple-scattering analysis of the EXAFS
data for the SI−CO complex reveals the presence of Ni−CO ligation, where the CO is bound in a linear
fashion appropriate for a terminal ligand. The putative role of form C in binding H2 or H- was examined
by comparing the XAS data from form C with that of its photoproduct, form L. The data rule out the
suggestion that the increase in charge density on the NiFe active site that accompanies the photoprocess
results in a two-electron reduction of the Ni site [Ni(III) → Ni(I)] [Happe, R. P., Roseboom, W., and
Albracht, S. P. J. (1999) Eur. J. Biochem. 259, 602−608]; only subtle structural differences between the
Ni sites were observed.