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Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex

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posted on 2016-12-09, 00:00 authored by Benjamin CowleyBenjamin Cowley, Matthew A. Smith, Adam Kohn, Byron YuByron Yu
Dimensionality reduction has been applied in various brain areas to study the activity of populations of neurons. To interpret the outputs of dimensionality reduction, it is important to first understand its outputs for brain areas for which the relationship between the stimulus and neural response is well characterized. Here, we applied principal component analysis (PCA) to trial-averaged neural responses in macaque primary visual cortex (V1) to study two fundamental, population-level questions. First, we characterized how neural complexity relates to stimulus complexity, where complexity is measured using relative comparisons of dimensionality. Second, we assessed the extent to which responses to different stimuli occupy similar dimensions of the population activity space using a novel statistical method. For comparison, we performed the same dimensionality reduction analyses on the activity of a recently-proposed V1 receptive field model and a deep convolutional neural network. Our results show that the dimensionality of the population response changes systematically with alterations in the properties and complexity of the visual stimulus.

Funding

This work was supported by a National Science Foundation Graduate Research Fellowship (to BRC), a National Defense Science and Engineering Graduate (32 CFR 168a) Fellowship (to BRC), NIH EY022928 and P30EY008098 (to MAS), Research to Prevent Blindness (to MAS), Eye and Ear Foundation of Pittsburgh (to MAS), NIH EY016774 (to AK), Research to Prevent Blindness (to AK), Irma T. Hirschl Career Scientist Award (to AK), NIH HD071686 (to BMY), NSF BCS1533672 (to BMY), Simons Foundation (364994, to BMY and AK), and a Carnegie Mellon University ProSEED / Brainhub seed grant (to BMY and MAS).

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Publisher Statement

This is the published PDF version of, "Cowley BR, Smith MA, Kohn A, Yu BM (2016) Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex. PLoS Comput Biol 12(12): e1005185. https://doi.org/10.1371/journal.pcbi.1005185."

Date

2016-12-09

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