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R4E-Master-Bioinformatics-v1.0.pptx (3.37 MB)

Reproducibility for Everyone - Bioinformatics Tools

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posted on 2019-06-17, 09:34 authored by Angela Abitua, April Clyburne-SherinApril Clyburne-Sherin, Benjamin SchwessingerBenjamin Schwessinger, Bradly AliceaBradly Alicea, Diep GangulyDiep Ganguly, Joanne Kamens, Lenny Teytelman, Nicolas SchmellingNicolas Schmelling, Sonali RoySonali Roy, Tracey L. Weissgerber
This presentation forms part of a eight-series presentation set covering various aspects of reproducibility. The presentation was developed by Reproducibility for Everyone. For more information visit their website - http://www.repro4everyone.org.

The Bioinformatics Tools presentation provide context and motivation for using notebooks to keep track of analysis, version control, package managers such as conda, containers like docker and binder to enhance the reproducibilty of research projects.

Funding

Mozilla Mini Grant

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    Keywords

    BioinformaticsReproducibilityReproducible ResearchDockerContainersAnalysis environmentsLiterate programmingJupyter NotebooksRStudio

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    CC BY 4.0

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