Raw transcriptome - Capsaspora owczarzaki

2017-11-03T10:02:09Z (GMT) by Multicellgenome Lab
Raw counts of
​RNA-seq mapping experiments of adherent, cystic and aggregative Capsaspora owczarzaki cells.
For each sample, the table contains the raw read counts (appendix: -#) and ​cRPKM values (appendix: -R). Methodological details
in Sebé-Pedrós et al. eLIFE 2013 (doi: 10.7554/eLife.01287).
Raw reads can be found in NCBI under BioProject accession number​
PRJNA20341
​.
​Sample description (see details in SRA):

SRR343047 Adherent cells (Stage 1)
SRR343054 Floating cells (Stage 2)
SRR515464 Capsaspora_owczarzaki_ATCC 30868_Line_2_Floating
SRR515465 Capsaspora_owczarzaki_ATCC 30872_Line_3_Aggregative
SRR515466 Capsaspora_owczarzaki_ATCC 30870_Line_1_Aggregative
SRR515467 Capsaspora_owczarzaki_ATCC 30871_Line_2_Aggregative
SRR515468 Capsaspora_owczarzaki_ATCC 30872_Line_3_Aggregative
SRR515469 Capsaspora_owczarzaki_ATCC 30870_Line_1_Aggregative
SRR515470 Capsaspora_owczarzaki_ATCC 30868_Line_2_Floating
SRR515471 Capsaspora_owczarzaki_ATCC 30871_Line_2_Aggregative
SRR515472 Capsaspora_owczarzaki_ATCC 30865_Line_2_Adherent
SRR515473 Capsaspora_owczarzaki_ATCC 30867_Line_1_Floating
SRR515474 Capsaspora_owczarzaki_ATCC 30866_Line_3_Adherent
SRR515475 Capsaspora_owczarzaki_ATCC 30864_Line_1_Adherent
SRR515476 Capsaspora_owczarzaki_ATCC 30869_Line_3_Floating
SRR515477 Capsaspora_owczarzaki_ATCC 30867_Line_1_Floating
SRR515478 Capsaspora_owczarzaki_ATCC 30865_Line_2_Adherent
SRR515479 Capsaspora_owczarzaki_ATCC 30869_Line_3_Floating
SRR515480 Capsaspora_owczarzaki_ATCC 30866_Line_3_Adherent
SRR515481 Capsaspora_owczarzaki_ATCC 30864_Line_1_Adherent

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