RNA-Seq isoform calls and differential expression - Kallisto and Sleuth. Allele-specific strategies in RNA-Seq analysis.

RNA-Seq isoform calls and differential expression (DE).

Explanation of the theory and examples of mapping-free tool Kalisto for RNA isoform calls and Sleuth, accompanying DE tool. 

Allele-specific strategies in RNA-Seq analysis: AlleleSeq, skewed binomial distribution, ALEA, WASP and combined haplotype test. Phasing/Imputation.