Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

Version 12 2021-06-26, 03:46

Version 11 2021-05-26, 11:24

Version 10 2021-03-17, 01:28

Version 9 2021-03-16, 06:03

Version 8 2020-07-23, 03:29

Version 7 2019-08-17, 04:24

Version 6 2019-08-12, 09:02

Version 5 2018-10-30, 20:42

Version 4 2018-03-08, 19:42

Version 3 2018-03-01, 15:21

Version 2 2018-02-27, 15:56

Version 1 2018-02-21, 21:00

dataset

posted on 2021-06-26, 03:46 authored by Daniel VaulotDaniel Vaulot, Laure GuillouLaure Guillou, Javier del CampoJavier del Campo

The Protist Ribosomal Reference database (PR²) provides a unique access to eukaryotic small sub-unit (SSU) ribosomal RNA and DNA sequences, with curated taxonomy. The database mainly consists of nuclear-encoded protistan sequences. However, metazoans, land plants, macrosporic fungi and eukaryotic organelles (mitochondrion, plastid and others) are also included because they are useful for the analysis of high-troughput sequencing data sets. Introns and putative chimeric sequences have been also carefully checked. Taxonomic assignation of sequences consists of eight unique taxonomic fields.

The database is now synchronized on Github for easier maintenance. Please go to the GitHub site to download the files you need.

Latest version 4.14.0 (June 2021)

Home page

https://github.com/pr2database/pr2database

Latest version of files

https://github.com/pr2database/pr2database/releases

Information

https://pr2-database.org/

Reports problems and bugs

https://github.com/pr2database/pr2database/issues

Contact

Daniel VAULOT, Laure GUILLOU
DIPO team, Plankton Group, UMR 7144 CNRS-UPMC
Station Biologique,
Place G. Tessier
29680 Roscoff FRANCE
email: vaulot@sb-roscoff.fr

Please cite

Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C. et al. 2013. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Res. 41:D597–604.