Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

2018-03-08T19:42:22Z (GMT) by Daniel Vaulot Laure Guillou
The Protist Ribosomal Reference database (PR<sup>2</sup>) provides a unique access to eukaryotic small sub-unit (SSU) ribosomal RNA and DNA sequences, with curated taxonomy. The database mainly consists of nuclear-encoded protistan sequences. However, metazoans, land plants, macrosporic fungi and eukaryotic organelles (mitochondrion, plastid and others) are also included because they are useful for the analysis of high-troughput sequencing data sets. Introns and putative chimeric sequences have been also carefully checked. Taxonomic assignation of sequences consists of eight unique taxonomic fields.<br><br><div>The database is now synchronized on <b>Github </b>for easier maintenance.<br></div><div><br></div><div><b>Home page</b></div><div>https://github.com/vaulot/pr2_database</div><div><br></div><div><b>Latest version of files</b></div><div>https://github.com/vaulot/pr2_database/releases</div><div><br></div><div><b>Information</b></div><div>https://github.com/vaulot/pr2_database/wiki<br></div><div><br></div><div><b>Reports problems and bugs</b></div><div>https://github.com/vaulot/pr2_database/issues<br></div><div><br><div><b>Contact<br><br></b>Daniel VAULOT, Laure GUILLOU and Fabrice NOT<br>DIPO team, Plankton Group, UMR 7144 CNRS-UPMC<br>Station Biologique,<br>Place G. Tessier<br>29680 Roscoff FRANCE<br>email: vaulot@sb-roscoff.fr<br><br><b>Please cite</b><br><p>Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C. et al. 2013. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. <i>Nucleic Acids Res.</i> 41:D597–604.</p><p><br></p><b>The PhytoRef (16S plastid database) is available here : </b>https://figshare.com/articles/PhytoREF_a_reference_database_of_the_plastidial_16S_rRNA_gene_of_photosynthetic_eukaryotes_with_curated_taxonomy/4689826</div></div>