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Pan-genome and core-genome.

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posted on 2017-05-24, 17:46 authored by Yan Pantoja, Kenny Pinheiro, Allan Veras, Fabrício Araújo, Ailton Lopes de Sousa, Luis Carlos Guimarães, Artur Silva, Rommel T. J. Ramos

Graph representing the pan-genome (blue) and core-genome (red) of the 45 analyzed genomes. The graph also shows the α coefficient value of Heap’s Law when fitting the curve to the mean (yellow curve) or median (green curve) of the different boxplots.

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    web applicationweb interfaceUNIX platform terminalsgenomic dataProkaryotic Genome Analysis ToolNGSgenomic characteristicssoftware toolsPerl scripting languagepan-genomic analysisnext-generation sequencingbioinformatics toolsR programming languagePGAP pipelinePanWebprokaryote genomesparameterized command linecustom-developed scriptsoutput filesspeciesPan-Genome Sequence Analysis Programpan-genomic analysesPGATorganism

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