PPTC RNAseq and Genomic Alterations
datasetposted on 09.07.2019 by Gregory Way, Jo Lynne Rokita
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
Data deposited here have origins through the National Cancer Institute Pediatric Preclinical Testing Consortion (NCI PPTC) and Alex's Lemonade Stand.
The RNAseq data is an FPKM matrix of 250 samples measured across 51,968 genes.
The alterations matrix consist of deleterious DNA mutations, DNA copy number alterations, and fusions of varying functional confidence.
Gene expression classifiers are applied to the gene expression matrix and the results are interpreted in https://github.com/marislab/pdx-classification