Transcriptome - Parvularia atlantis (Nuclearia sp. ATCC 50694)

2017-09-26T18:10:16Z (GMT) by Multicellgenome Lab Guifré Torruella
<div>Reads are deposited in NCBI: https://www.ncbi.nlm.nih.gov/sra/?term=SRS725006<br></div><div><br></div><div>- Assembly in-home BGI to obtain Unigene (contigs)</div><div>- ORF prediction using TransDecoder (Trinity plugin) and PfamScan to obtain coding sequences (CDS files) from transcripts (mRNA)</div><div>- Protein translations are included (pep)</div><div><br></div><div>- clean.fasta: Assembly cleaned from cross-contamination of other species multiplexed (Corallochytrium limacisporum Hawaii, Pirum gemmata and Abeoforma whisleri) after applying CroCo V0.1.1 (Simion et al. in prep). It may contain bacterial contamination.<br></div><div><br></div><strong>Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, </strong>Mark A. Chaplin<strong>, Javier del Campo, </strong>Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie,<strong> and Iñaki Ruiz-Trillo. </strong>(2015) <em>Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.</em> <a href="http://authors.elsevier.com/a/1Rl0J3QW8RZw9k" target="_blank"><strong><em>Current Biology </em></strong>25(18):2404-10.</a><div><br></div><div><a href="http://www.multicellgenome.com">www.multicellgenome.com</a></div>