ppat.1006876.g008.tif (5.52 MB)
Molecular dynamics simulations of rhodomyrtone binding to 3:1 POPG/POPE bilayers (100 ns).
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posted on 2018-02-16, 18:42 authored by Dennapa Saeloh, Varomyalin Tipmanee, Kin Ki Jim, Marien P. Dekker, Wilbert Bitter, Supayang P. Voravuthikunchai, Michaela Wenzel, Leendert W. Hamoen(A) Structure of rhodomyrtone. Polar residues are displayed in blue, non-polar residues in red. (B) Membrane state before binding of rhodomyrtone (orange). (C) POPE (green) and POPG (blue) are dragged out of the bilayer by rhodomyrtone. (D) The compound induces tighter head group packing in the outer membrane leaflet, promoting wider fatty acid spreading in the inner leaflet (arrows), resulting in higher membrane fluidity. (E-F) Binding of rhodomyrtone to lipid head groups affects the arrangement of fatty acid chains within the bilayer. Rearrangement of lipids bound by rhodomyrtone (blue) also affects fatty acid chain packing in the inner leaflet (arrows).
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ATP synthaseacylphloroglucinol rhodomyrtoneintracellular proteinelectron microscopymembrane-inserting moleculerhodomyrtone transientlyrhodomyrtone causesAberrant protein localization impairsantibiotic candidatemembrane proteinsform intracellular vesiclesmembrane curvaturebinding modeintracellular targetsmyrtle Rhodomyrtus tomentosacauses distortionform protein-trapping membrane vesiclesmembrane invaginationsPreceding studiesamphipathic structurenovel mechanismmembrane fluidizationnovel antibiotic rhodomyrtone traps membrane proteinsdynamics simulationsphospholipid head groups
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