This directory contains data associated with the Morgan et al 2010 metagenomic simulation work. The subdirectories contain the following information:
raw_reads - Read data generated by paired-end sanger and pyrosequencing methods, along with quality files, and reads screened for vector and quality
taxonomic_assignment - Assignment of reads to reference organisms, including blast hits and scripts for processing them
unassigned_analysis - BLAST searches of unmapped reads against the NCBI NT database, MEGAN assignments of reads to taxa
L_lactis_comparison - Comparison of the two Lactococus lactis strains using Mauve genome alignment to determine whether reads are distinguishable between the isolates.