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FINAL L with accession numbers and clades.tif (22.38 MB)

Measles vaccine virus RNA in children more than 100 days after vaccination - Phylogenetic analysis of measles virus partial Large gene (L) gene sequences.

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Partial sequence generated using the L gene RT-PCR. Representative MeV strain sequences include GenBank accession numbers and the eight clades are designated A­­–­H. MeVV sequences associated with patients and vaccine strain genotype A (red) viruses are indicated by case number and associated GenBank accession number. Wildtype genotype A is indicated in blue. Phylogenetic analysis used the Neighbor-Joining method Maximum Composite Likelihood methods was performed in MEGA7 with a bootstrap analysis of 1000 replicates. The percentage of replicate trees in the bootstrap test (1000 replicates) greater than 85 are shown next to the branches.

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