ppat.1007368.g002.tif (253.54 kB)
Maximum likelihood phylogenetic trees of BK polyomavirus.
figure
posted on 2018-10-18, 18:08 authored by Pilar Domingo-Calap, Benjamin Schubert, Mélanie Joly, Morgane Solis, Meiggie Untrau, Raphael Carapito, Philippe Georgel, Sophie Caillard, Samira Fafi-Kremer, Nicodème Paul, Oliver Kohlbacher, Fernando González-Candelas, Seiamak BahramThree major groups are found: genotype I in blue, a single group including genotypes II/III in red, and genotype IV in green. (A) Unrooted ML phylogenetic tree with 309 complete genome published sequences retrieved from NCBI. (B) Unrooted ML phylogenetic tree with 309 VP1 gene sequences retrieved from NCBI. (C) Unrooted ML phylogenetic tree with 225 complete genome consensus sequences obtained in this study by next-generation sequencing and one reference strain of each genotype and subtype. Reference strains are marked with dots (Ia, Ib1, Ib2, Ic, II, III, IVa1, IVa2, IVb1, IVb2, IVc1, IVc2).
