Materials for "Accurate automatic detection of densely distributed cell nuclei in 3D space"

dataset

posted on 2016-05-12, 09:35 authored by Yu ToyoshimaYu Toyoshima, Terumasa Tokunaga, Osamu Hirose, Manami Kanamori, Takayuki Teramoto, Moon Sun Jang, Sayuri Kuge, Takeshi Ishihara, Ryo Yoshida, Yuichi Iino

Data and code associated with "Accurate automatic detection of densely distributed cell nuclei in 3D space" manuscript.

This data contains the images, ground truth, code, and executable used in the manuscript.

"software.zip" includes code and executable of the image analysis pipeline.

"data.zip" includes microscopy images and ground truth used in the manuscript. "data2.zip" contains 4D movie of whole brain activity imaging in Data2, a part of the dataset used in the manuscript.

Funding

This work was supported by the CREST program "Creation of Fundamental Technologies for Understanding and Control of Biosystem Dynamics" of JST, Japan, and by Grants-in-Aid (20115002, 221S0003, 26830006, 24800014, 16H01418) from MEXT, Japan.

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Keywords

Bioimage informatics Software 3D image C. elegans Whole brain imaging Neuroscience Quantitative biology Computational Biology Animal Neurobiology Bioinformatics Biological Techniques

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MIT

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