Mango Transcriptome Assembly

Version 2 2019-06-19, 14:09

Version 1 2019-06-14, 11:34

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posted on 2019-06-19, 14:09 authored by Tinashe ChabikwaTinashe Chabikwa, Francois Barbier, Milos Tanurdzic, Christine Beveridge

This mango transcriptome assembly was derived from pooled leaf, stem, bud, root, floral and fruit tissue. Using normalized cDNA libraries, we generated comprehensive RNA-Seq datasets using the Illumina NextSeq 500 platform. 82198 of mango unigenes were generated and functionally annotated using a combination of de novo transcriptome assembly, redundancy reduction and Basic Local Alignment Search Tool (BLAST) searches to the Universal Protein Resource UniProtKB/Swiss-Prot database.

Funding

This work was financially supported by the Australian Research Council, the Queensland Government and the Horticulture Innovation Australia Limited.

ARC Laureate Fellowship FL180100139

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Keywords

gene discovery mango Normalized libraries de novo assembly of RNA-seq gene annotations Plant Developmental and Reproductive Biology Plant Cell and Molecular Biology

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