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Hancock, P.A., White, V.L., Ritchie, S.A.,Hoffmann, A.A. and Godfray, H.C.J. 2016 Predicting Wolbachia invasion dynamics in Aedes aegypti populations using models of density-dependent demographic traits. BMC Biology. C++ computer code for implementing the population dynamic model described in Hancock et al. 2016 BMC Biology
gyp_sim.cpp (version 04/10/2016) was developed by Dr Penelope A. Hancock
gyp_sim.cpp comprises C++ code for implementing the model
of mosquito-Wolbachia dynamics developed in Hancock et al. 2016,
"Predicting Wolbachia invasion dynamics in Aedes aegypti populations using
models of density-dependent demographic traits", BMC Biology.
To run gyp_sim use the command gyp_sim.exe
The file gyp_sim_inits.txt contains the following inputs:
Cohort_means.txt (a file for storing the mean development times of uninfected larvae in each cohort)
Cohort_means_wolb.txt (a file for storing the mean development times of infected larvae in each cohort)
Cohort_stds.txt (a file for storing the standard deviations of the development times of uninfected larvae in each cohort)
Cohort_stds_wolb.txt (a file for storing the standard deviations of the development times of infected larvae in each cohort)
mu_p.txt (a file for storing the number of uninfected pupae that eclose on each day)
L_file.txt (a file for storing the number of uninfected larvae present on each day)
A_file.txt (a file for storing the number of uninfected adults present on each day)
mu_p_wolb.txt (a file for storing the number of infected pupae that eclose on each day)
L_wolb_file.txt (a file for storing the number of infected larvae present on each day)
A_wolb_file.txt (a file for storing the number of infected adults present on each day)
FreqA2_file.txt (a file for storing the Wolbachia frequency on the final day of release)
lambda.txt (a file for storing the per-capita female fecundity at the time that each cohort is hatched)
release_size.txt (a file for storing the size of each Wolbachia release)
700 (the day of the first release)
0.1 (additional density-INdependent daily mortality experienced by adults In the field environment)
0.1 (additional density-INdependent daily mortality experienced by larvae in the field environment)