Grayling draft genome dataset
2017-06-22T10:52:25Z (GMT) by
Tthymallus_scaffolds.fasta - Assembled scaffold sequences
Tthymallus_RepeatLibrary_deNovo.fasta - De novo repeat library sequences
Tthymallus_transcriptome_DeNovo.fasta - De novo transcriptome assembly using Trinity (followed by RSEM based filtering)
Tthymallus_transcriptome_ReferenceBased.fasta - Reference-based transcriptome using STAR-Cufflinks-transdecoder pipeline (followed by filtering based on homology to known proteins from zebrafish and stickleback proteins.
Tthymallus_ScaffoldAnnotation.gff3 - MAKER pipeline based annotation for the scaffolds.
Tthymallus_proteins.fasta - Grayling protein sequences used for inferring orthologous groups (based on MAKER annotations)
Tthymallus_maker_fullOutput.gff - Full output from MAKER
Tthymallus_CPMcounts.txt - Expression counts for grayling
OrthologousGroups.txt - Inferred orthologous groups using Orthofinder