Grayling draft genome dataset

2017-06-22T10:52:25Z (GMT) by Srinidhi Varadharajan Lex Nederbragt
<div>###### Description</div><div><br></div><div><br></div><div>Tthymallus_scaffolds.fasta - Assembled scaffold sequences</div><div><br></div><div>Tthymallus_RepeatLibrary_deNovo.fasta - De novo repeat library sequences</div><div><br></div><div>Tthymallus_transcriptome_DeNovo.fasta - De novo transcriptome assembly using Trinity (followed by RSEM based filtering)</div><div><br></div><div>Tthymallus_transcriptome_ReferenceBased.fasta - Reference-based transcriptome using STAR-Cufflinks-transdecoder pipeline (followed by filtering based on homology to known proteins from zebrafish and stickleback proteins.</div><div><br></div><div>Tthymallus_ScaffoldAnnotation.gff3 - MAKER pipeline based annotation for the scaffolds.</div><div><br></div><div>Tthymallus_proteins.fasta - Grayling protein sequences used for inferring orthologous groups (based on MAKER annotations)</div><div><br></div><div>Tthymallus_maker_fullOutput.gff - Full output from MAKER</div><div><br></div><div>Tthymallus_CPMcounts.txt - Expression counts for grayling</div><div><br></div><div>OrthologousGroups.txt - Inferred orthologous groups using Orthofinder</div><div><br></div><div><br></div><div><br></div>