GM_primary_files.zip

GigaMUGA SNP data for the CC founder lines. The zip file contains the primary .RData files from ftp.jax.org/MUGA:

GM_code: strain name -> genotype code (115 lines)

GM_geno: genotypes (markers x strains) as single-letter codes N,C,T,A,G,H (143259 x 115)

GM_sex: sex of individuals (M/F)

GM_snps: snps x info (marker, chr, pos, cM, A1, A2, type, ..., tier); chr = 1-19,X,Y,M,P

GM_x, GM_y: x and y intensities, markers x strains