GC percent at sequence level of different feature types in the TGAC 1 assembly of Chalara fraxinea and associated read sets

2013-05-24T16:14:52Z (GMT) by Dan MacLean
<p>The TGAC Chalara assembly at </p> <p>https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1</p> <p>and gDNA and RNAseq reads at</p> <p>https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/reads</p> <p> </p> <p>and the TGAC annotation at</p> <p>https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/annotations/Gene_predictions/TGAC_Chalara_fraxinea_ass_s1v1_ann_v1.1</p> <p> </p> <p>were used as source for per sequence GC content examination. Sequence for features (CDS,exons, genes, introns, intergenic were extracted from the scaffold sequence based on the GFF annotation file).</p>