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rdfio_orphanet_demonstrator_wiki_content.xml.gz (4.16 MB)
Example wiki content for RDFIO demonstrator I: OrphaNet data imported into Semantic MediaWiki
dataset
posted on 2017-09-06, 17:27 authored by Samuel LampaSamuel Lampa, Egon WillighagenEgon Willighagen, Pekka KohonenPekka Kohonen, ALISON KING, Denny Vrandečić, Roland Grafström, Ola SpjuthOla SpjuthThis file is a MediaWiki XML dump of the wiki content generated for Demonstrator I in the RDFIO article [1], importing the open part of the OrphaNet dataset [2], converted to RDF in the Bio2RDF project [3].
They are exported using a command like:
cd WIKIDIR
php maintenance/dumpBackup.php --current | gzip -c > FILENAME.xml.gz
They can be imported into a Semantic MediaWiki enabled MediaWiki wiki, using the command:
cd WIKIDIR
php maintenance/importDump.php FILENAME.xml.gz
License information
See this page for information and links to the OrphaNet data used:
http://download.bio2rdf.org/release/3/orphanet/orphanet.html
References
cd WIKIDIR
php maintenance/dumpBackup.php --current | gzip -c > FILENAME.xml.gz
They can be imported into a Semantic MediaWiki enabled MediaWiki wiki, using the command:
cd WIKIDIR
php maintenance/importDump.php FILENAME.xml.gz
License information
See this page for information and links to the OrphaNet data used:
http://download.bio2rdf.org/release/3/orphanet/orphanet.html
References
[1] Lampa S, Willighagen E, Kohonen P, King A, Vrandečić D, Grafström R, Spjuth O. RDFIO: Extending Semantic MediaWiki for interoperable biomedical data management. 2017;8(35):1-13. doi:10.1186/s13326-017-0136-y
http://dx.doi.org/10.1186/s13326-017-0136-y
[2] Rath A, Olry A, Dhombres F, Brandt MM, Urbero B, Ayme S. Representation of rare diseases in health information systems: The orphanet approach to serve a wide range of end users. HumMutation. 2012;33(5):803–8. doi:10.1002/humu.22078.
http://dx.doi.org/10.1002/humu.22078
[3] Belleau F, NolinMA, Tourigny N, Rigault P, Morissette J. Bio2rdf: Towards amashup to build bioinformatics knowledge systems. J Biomed Inform. 2008;41(5):706–16. doi: 10.1016/j.jbi.2008.03.004. Semantic Mashup of Biomedical Data
http://dx.doi.org/10.1016/j.jbi.2008.03.004
http://dx.doi.org/10.1186/s13326-017-0136-y
[2] Rath A, Olry A, Dhombres F, Brandt MM, Urbero B, Ayme S. Representation of rare diseases in health information systems: The orphanet approach to serve a wide range of end users. HumMutation. 2012;33(5):803–8. doi:10.1002/humu.22078.
http://dx.doi.org/10.1002/humu.22078
[3] Belleau F, NolinMA, Tourigny N, Rigault P, Morissette J. Bio2rdf: Towards amashup to build bioinformatics knowledge systems. J Biomed Inform. 2008;41(5):706–16. doi: 10.1016/j.jbi.2008.03.004. Semantic Mashup of Biomedical Data
http://dx.doi.org/10.1016/j.jbi.2008.03.004
