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rdfio_drugmet_demonstrator_wiki_content.xml.gz (9.16 kB)

Example wiki content for RDFIO demonstrator II: DrugMet data imported into Semantic MediaWiki

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posted on 2017-09-06, 17:39 authored by Samuel LampaSamuel Lampa, Egon WillighagenEgon Willighagen, Pekka KohonenPekka Kohonen, ALISON KING, Denny Vrandečić, Roland Grafström, Ola SpjuthOla Spjuth
This file is a MediaWiki XML dump of the wiki content generated for Demonstrator II in the RDFIO article [1], importing the open part of the DrugMet dataset, extracted from WikiData [2].

They are exported using a command like:

cd WIKIDIR
php maintenance/dumpBackup.php --current | gzip -c > FILENAME.xml.gz

They can be imported into a Semantic MediaWiki enabled MediaWiki wiki, using the command:

cd WIKIDIR
php maintenance/importDump.php FILENAME.xml.gz

License information

See the WikiData front page page for information about the license of data in WikiData: https://www.wikidata.org

References

[1] Lampa S, Willighagen E, Kohonen P, King A, Vrandečić D, Grafström R, Spjuth O. RDFIO: Extending Semantic MediaWiki for interoperable biomedical data management. 2017;8(35):1-13. doi:10.1186/s13326-017-0136-y.
http://dx.doi.org/10.1186/s13326-017-0136-y

[2] Vrandečić D, Krötzsch M. Wikidata: A Free Collaborative Knowledgebase. Commun ACM. 2014;57(10):78–85. doi:10.1145/2629489
http://dx.doi.org/10.1145/2629489

Funding

The work was supported by the Google Summer of Code program of 2010 granted to WikiMedia Foundation, the Gnome FOSS OPW program for 2014 granted to WikiMedia foundation, the Swedish strategic research programme eSSENCE, the Swedish e-Science Research Centre (SeRC), and the eNanoMapper project EU FP7, technological development and demonstration (FP7-NMP-2013-SMALL-7) under grant agreement no. 604134.

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