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Widefield_bioreactor_lung_rfp.cpproj (561.56 kB)
Example CellProfiler pipeline for the image analysis of the lung cancer cell bioreactor cultures
dataset
posted on 2017-11-20, 10:42 authored by Emma Jane Davies, Meng Dong, Katja Maria Närhi, Sami Blom, Catarina Brito, ralph graeser, Suzana Vidic, Annika Osswald, Erwin Boghaert, Ronald De Hoogt, Marta F Estrada, Michael Barbier, Vítor Espirito Santo, Kjersti Gjerde, Hanneke J.A.A. van Zoggel, Yolanda ChongExample CellProfiler pipeline for the image analysis of the breast cancer cell (MCF7) bioreactor culture samples (also uploaded to this figShare record under "ZIP-file of fluorescent (widefield) images of bioreactor breast cancer cell cultures"). To use this pipeline it should be opened with CellProfiler and the file paths in the first module "Images" (which loads the input images) should be adapted to reflect the location of the images, as well as the output paths in the modules "ExportToSpreadSheet" and "SaveImages".
