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Desnity Plot of GC Content all sites all domains.png (157.4 kB)

Density Plot of GC Content of AD, KS, and KSa Domains

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Version 2 2013-11-26, 02:49
Version 1 2013-11-26, 03:53
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posted on 2013-11-26, 03:53 authored by Ara KooserAra Kooser

Data set from Reddy et al 2012, SRR342214. AD, KS, KSa desert soil sequences were mined from the sra file. Fragments of less then 150 base pairs were removed. CodonW was used to calculate all codon bias indices. The UT microbial community's GC content of the three natural product genes is slightly shifted to the right of the other communities.  

AB - California, AZ - Arizona, UT - Utah

Condonw command: ./codonw yourfile.fasta -all_indices -c_type 2 -f_type 4 -nomenu -silent

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