posted on 2016-04-12, 16:18authored byHollie-Ann Hatherell, Xavier Didelot, Sue L. Pollock, Patrick Tang, Anamaria Crisan, James C. Johnston, Caroline Colijn, Jennifer Gardy
Text file commands used in reference alignment and
variant calling and fasta file of the final dataset of variants as published in Microbial Genomics in the following article: 'Declaring a tuberculosis outbreak over with genomic epidemiology'