Dataset used in "Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry"

This fileset contains the complete data to reproduce the analysis described in:

K. R. Uhlmann, S.Gibb, S. Kalkhof, U. Arroyo-Abad, C. Schulz, B. Hoffmann, F. Stubbins, S. Carpenter, M. Beer, M. von Bergen, R. Feltens. 2013. Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry. [submitted]

 

Included files:

smm.zip: SMM spectra (Bruker fid files) from C. dewulfi, C. newsteadi, C. nubeculosus, C. obsoletus, C. pulicaris, C. punctatus, C. scoticus

referencetable.csv: mapping between SMM spectra and species/individuals

pcr.fasta: PCR results (mt-COX1; barcoding gene) of each individual

drosophila_melanogaster-reference_proteome.fasta: Drosophila melanogaster reference proteome (downloaded from the UniProt Database, 2013-08-15: http://www.uniprot.org/uniprot/?query=organism:7227+AND+keyword:1185)

figure7.zip: a SMM and an IPP spectrum (Bruker fid files) for a comparative plot