Data files from the Australian Marine Microbial Biodiversity Initiative

Version 4 2018-07-18, 01:50

Version 3 2018-03-23, 02:49

Version 2 2018-01-31, 05:23

Version 1 2018-01-23, 00:17

dataset

posted on 2018-07-18, 01:50 authored by mark brownmark brown

Tab delimited text files containing sample by abundance tables for unique bacterial (B16S) and archaeal (A16S) 16S v1-3 and eukaryote (18Sv4) 18S v4 rRNA sequence variants, and corresponding taxonomic classification generated by the Australian Marine Microbial Biodiversity Initiative. Sequences were classified using the Silva v132 database using MOTHURs implementation of the Wang classifier and a 60% Bayesian probability.

AMMBI_Contextual_data

Environmental data collected by the Integrated Marine Observing System at National Reference Stations that correspond with samples for which molecular data was generated by the Australian marine Microbial Biodiversity Initiative. Data were collated from the Australian Ocean Data Network portal (https://portal.aodn.org.au/) as of 31 Jan 2018

Funding

Australian Research Council awards DP0988002; DP120102764; DP150102326; Data sourced from and sample collection funded by the Integrated Marine Observing System (IMOS) — IMOS is a national collaborative research infrastructure, supported by the Australian Government. Sequencing and bioinformatics of this program is funded by Bioplatforms Australia (BPA). We would like to acknowledge the contribution of the Marine Microbes Project consortium (https://data.bioplatforms.com/organization/pages/bpa-marine-microbes/consortium) in the generation of data used in this publication. The Marine Microbes Project is supported by funding from Bioplatforms Australia through the Australian Government National Collaborative Research Infrastructure Strategy (NCRIS).

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Keywords

marine, microbiology, taxonomy, eukaryote, bacteria, archaea Biogeography and Phylogeography Bioinformatics Genomics Marine Biology Microbial Ecology Microbial Genetics

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CC BY 4.0

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