Input and output files for the continuum electrostatics and Monte Carlo computations described in "With or without light: comparing the reaction mechanism of dark-operative protochlorophyllide oxidoreductase with the energetic requirements of the light-dependent protochlorophyllide oxidoreductase" PeerJ, 2014, e551
MEAD (Bashford) can be obtained from http://stjuderesearch.org/site/lab/bashford
MCRP (Baptista et al.) can be obtained from http://www.itqb.unl.pt/labs/molecular-simulation/in-house-software