Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues)

2014-06-18T22:37:31Z (GMT) by Claire Olson Steven Roberts
<p>This fileset contains genomic feature tracks from high-throughput bisulfite sequencing for Pacific oyster (Crassostrea gigas) spermatozoa and larvae samples. Samples were taken from two males (Male 1 and Male 3) and larvae taken from these males at Day 3 (D3) and Day 5 (D5) post-fertilization. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Ensembl).</p> <p>File descriptions:<br><em>methratio_out_CG5x_IGV_M1.igv</em>  - Male 1 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.</p> <p><em>methratio_out_CG5x_IGV_M3.igv</em>  - Male 3 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.</p> <p><em>methratio_out_CG5x_IGV_T1D3.igv</em> - Larvae from male 1 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.</p> <p><em>methratio_out_CG5x_IGV_T1D5.igv </em>- Larvae from male 1 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.</p> <p><em>methratio_out_CG5x_IGV_T3D3.igv</em> - Larvae from male 3 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.</p> <p><em>methratio_out_CG5x_IGV_T3D5.igv</em> - Larvae from male 3 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.</p> <p><em>LarvaeSperm_igv.xml</em> - A session file, which loads sample methylation tracks and location of C.gigas genome features.</p> <p> </p> <p> </p>