Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues)

2014-06-18T22:37:31Z (GMT) by Claire Olson Steven Roberts

This fileset contains genomic feature tracks from high-throughput bisulfite sequencing for Pacific oyster (Crassostrea gigas) spermatozoa and larvae samples. Samples were taken from two males (Male 1 and Male 3) and larvae taken from these males at Day 3 (D3) and Day 5 (D5) post-fertilization. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Ensembl).

File descriptions:
methratio_out_CG5x_IGV_M1.igv  - Male 1 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

methratio_out_CG5x_IGV_M3.igv  - Male 3 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

methratio_out_CG5x_IGV_T1D3.igv - Larvae from male 1 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

methratio_out_CG5x_IGV_T1D5.igv - Larvae from male 1 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

methratio_out_CG5x_IGV_T3D3.igv - Larvae from male 3 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

methratio_out_CG5x_IGV_T3D5.igv - Larvae from male 3 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

LarvaeSperm_igv.xml - A session file, which loads sample methylation tracks and location of C.gigas genome features.