Crassostrea gigas high-throughput bisulfite sequencing (gill tissue)

2013-10-20T21:15:11Z (GMT) by Mackenzie Gavery Steven Roberts

This fileset contains genomic feature tracks from methylation-enriched high-throughput bisulfite sequencing and RNA-seq analysis for Pacific oyster (Crassostrea gigas) gill tissue. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Fang et al. 2012). All data and instructions are also available at http://oystergen.es/bigill.

File descriptions:

BiGill_CpG_methylation.igv - Location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage.

BiGill_exon_clc_rpkm.igv - Exon-specific gene expression values (RPKM) from RNA-seq analysis.

BiGill_igv_charlie.xml - A session file, which loads methylation and RNA-seq feature tracks as well as the location of C.gigas genome features.

Query to derive_CG_AllData_IGV.txt - Query (SQLShare) used to derive the methylation feature track from the original methratio output (http://goo.gl/5LGq9Q)

Reference:

Fang X, Li L, Luo R, Xu F, Wang X, Zhu Y, Yang L, Huang Z. 2012. Genomic data from the Pacific oyster (Crassostrea gigas). GigaScience. http://dx.doi.org/10.5524/100030.