Coding sequence alignments of 9,861 mammalian orthologs

The compressed folder contains fasta coding sequence alignments of 9,861 mammalian orthologs. Best reciprocal hits of human Ensembl v69 coding sequences were obtained with Blat for 23 other mammalian species, and those best reciprocal sequences were then aligned with PRANK. Note that best reciprocal hits are not sufficient to establish orthology, and we recommend additional filtering with synteny information.