CNV variant plots imposted on local trees
2016-09-16T13:00:54Z (GMT) by
CNV variant plots imposted on local trees, as shown in Figure 3 of the manuscript.
For each CNV we extracted all SNPs from 20 kb upstream and 20 kb downstream. We then used these concatenated SNPs to build a local SNP-based tree with FastTree. The copy numbers of each strain were imposed on this tree.