CNV variant plots imposted on local trees

<div>CNV variant plots imposted on local trees, as shown in Figure 3 of the manuscript.</div><div><br></div><div>For each CNV we extracted all SNPs from 20 kb upstream and 20 kb downstream. We then used these concatenated SNPs to build a local SNP-based tree with FastTree. The copy numbers of each strain were imposed on this tree.</div><div><br></div><div></div>