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CNV variant plots imposted on local trees

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posted on 2016-09-16, 13:00 authored by Daniel JeffaresDaniel Jeffares, Liam ShawLiam Shaw, Fritz SedlazeckFritz Sedlazeck
CNV variant plots imposted on local trees, as shown in Figure 3 of the manuscript.

For each CNV we extracted all SNPs from 20 kb upstream and 20 kb downstream. We then used these concatenated SNPs to build a local SNP-based tree with FastTree. The copy numbers of each strain were imposed on this tree.

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