CAZY (carbohydrate processing enzymes) PFAM containing proteins in TGAC Chalara fraxinea assembly 1, Postia placenta and Fusarium graminareum

2013-05-24T16:14:52Z (GMT) by Dan MacLean
<p>Proteins predicted in Chalara fraxinea (https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/annotations/Gene_predictions/TGAC_Chalara_fraxinea_ass_s1v1_ann_v1.1/Chalara_fraxinea_ass_s1v1_ann_v1.1.protein.faa)</p> <p>Postia placenta (http://genome.jgi.doe.gov/Pospl1/Pospl1.home.html)</p> <p>and </p> <p>Fusarium graminareum</p> <p>(http://www.broadinstitute.org/annotation/genome/fusarium_group/MultiHome.html)</p> <p> </p> <p>were used in PFAMSCAN to identify proteins containing domains from the list at E<=1e-6:</p> <p> </p> <p>#name clan id<br>Alpha-amylase Glyco_hydro_tim CL0058<br>Alpha_L_fucos Glyco_hydro_tim CL0058<br>Cellulase Glyco_hydro_tim CL0058<br>Cellulase-like Glyco_hydro_tim CL0058<br>DUF187 Glyco_hydro_tim CL0058<br>DUF4015 Glyco_hydro_tim CL0058<br>DUF4038 Glyco_hydro_tim CL0058<br>DUF4434 Glyco_hydro_tim CL0058<br>GHL1-3 Glyco_hydro_tim CL0058<br>GHL12 Glyco_hydro_tim CL0058<br>GHL13 Glyco_hydro_tim CL0058<br>GHL15 Glyco_hydro_tim CL0058<br>GHL5 Glyco_hydro_tim CL0058<br>GHL6 Glyco_hydro_tim CL0058<br>Glyco_hydr_30_2 Glyco_hydro_tim CL0058<br>Glyco_hydro_1 Glyco_hydro_tim CL0058<br>Glyco_hydro_10 Glyco_hydro_tim CL0058<br>Glyco_hydro_101 Glyco_hydro_tim CL0058<br>Glyco_hydro_114 Glyco_hydro_tim CL0058<br>Glyco_hydro_14 Glyco_hydro_tim CL0058<br>Glyco_hydro_17 Glyco_hydro_tim CL0058<br>Glyco_hydro_18 Glyco_hydro_tim CL0058<br>Glyco_hydro_20 Glyco_hydro_tim CL0058<br>Glyco_hydro_25 Glyco_hydro_tim CL0058<br>Glyco_hydro_26 Glyco_hydro_tim CL0058<br>Glyco_hydro_2_C Glyco_hydro_tim CL0058<br>Glyco_hydro_3 Glyco_hydro_tim CL0058<br>Glyco_hydro_30 Glyco_hydro_tim CL0058<br>Glyco_hydro_31 Glyco_hydro_tim CL0058<br>Glyco_hydro_35 Glyco_hydro_tim CL0058<br>Glyco_hydro_39 Glyco_hydro_tim CL0058<br>Glyco_hydro_42 Glyco_hydro_tim CL0058<br>Glyco_hydro_44 Glyco_hydro_tim CL0058<br>Glyco_hydro_53 Glyco_hydro_tim CL0058<br>Glyco_hydro_56 Glyco_hydro_tim CL0058<br>Glyco_hydro_59 Glyco_hydro_tim CL0058<br>Glyco_hydro_66 Glyco_hydro_tim CL0058<br>Glyco_hydro_70 Glyco_hydro_tim CL0058<br>Glyco_hydro_72 Glyco_hydro_tim CL0058<br>Glyco_hydro_77 Glyco_hydro_tim CL0058<br>Glyco_hydro_79n Glyco_hydro_tim CL0058<br>Glyco_hydro_97 Glyco_hydro_tim CL0058<br>Glyco_hydro_cc Glyco_hydro_tim CL0058<br>hDGE_amylase Glyco_hydro_tim CL0058<br>Lipid_bd Glyco_hydro_tim CL0058<br>Melibiase Glyco_hydro_tim CL0058<br>NAGidase Glyco_hydro_tim CL0058<br>NAGLU Glyco_hydro_tim CL0058<br>Raffinose_syn Glyco_hydro_tim CL0058<br>Xylanase Glyco_hydro_tim CL0058<br>Alg14 Glyco_tran_28_C PF04101<br>Capsule_synth Glyco_tran_28_C PF04101<br>DUF1205 Glyco_tran_28_C PF04101<br>DUF1972 Glyco_tran_28_C PF04101<br>DUF3492 Glyco_tran_28_C PF04101<br>DUF354 Glyco_tran_28_C PF04101<br>Epimerase_2 Glyco_tran_28_C PF04101<br>Glyco_tran_28_C Glyco_tran_28_C PF04101<br>Glyco_trans_1_2 Glyco_tran_28_C PF04101<br>Glyco_trans_1_3 Glyco_tran_28_C PF04101<br>Glyco_trans_1_4 Glyco_tran_28_C PF04101<br>Glyco_trans_4_2 Glyco_tran_28_C PF04101<br>Glyco_trans_4_3 Glyco_tran_28_C PF04101<br>Glyco_trans_4_4 Glyco_tran_28_C PF04101<br>Glyco_transf_20 Glyco_tran_28_C PF04101<br>Glyco_transf_28 Glyco_tran_28_C PF04101<br>Glyco_transf_4 Glyco_tran_28_C PF04101<br>Glyco_transf_41 Glyco_tran_28_C PF04101<br>Glyco_transf_5 Glyco_tran_28_C PF04101<br>Glyco_transf_56 Glyco_tran_28_C PF04101<br>Glyco_transf_9 Glyco_tran_28_C PF04101<br>Glyco_transf_90 Glyco_tran_28_C PF04101<br>Glycogen_syn Glyco_tran_28_C PF04101<br>Glycos_transf_1 Glyco_tran_28_C PF04101<br>Glycos_transf_N Glyco_tran_28_C PF04101<br>Glyphos_transf Glyco_tran_28_C PF04101<br>LpxB Glyco_tran_28_C PF04101<br>MGDG_synth Glyco_tran_28_C PF04101<br>Mito_fiss_Elm1 Glyco_tran_28_C PF04101<br>Phosphorylase Glyco_tran_28_C PF04101<br>PIGA Glyco_tran_28_C PF04101<br>PS_pyruv_trans Glyco_tran_28_C PF04101<br>SUA5 Glyco_tran_28_C PF04101<br>Sucrose_synth Glyco_tran_28_C PF04101<br>UDPGT Glyco_tran_28_C PF04101<br>Aldose_epim Lyase_8 PF02278<br>Bgal_small_N Lyase_8 PF02278<br>DUF4432 Lyase_8 PF02278<br>Gal_mutarotas_2 Lyase_8 PF02278<br>Glyco_hyd_65N_2 Lyase_8 PF02278<br>Glyco_hydro_38C Lyase_8 PF02278<br>Glyco_hydro_65N Lyase_8 PF02278<br>Lyase_8 Lyase_8 PF02278<br>MdoG Lyase_8 PF02278<br>Rhamnogal_lyase Lyase_8 PF02278<br>YidC_periplas Lyase_8 PF02278</p> <p>(identified from <a href="http://www.google.co.uk/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&cad=rja&ved=0CDIQFjAA&url=http%3A%2F%2Fwww.cazy.org%2F&ei=f4GfUfCGNdS3hAeIkIDoAw&usg=AFQjCNHSF5sbnGEDstiZO1ycgWwmM2a-lg&bvm=bv.47008514,d.ZG4">CAZy - Home</a>) </p> <p> </p> <p>Counts of proteins containing each PFAM domain are shown</p> <p> </p> <p> </p> <p> </p> <p></p>