BFA Pearsons Correlation Bacteria Euryarchaeota Genomes April 2014.pdf (753.67 kB)
Bayesian First Aid Pearson Correlation - NCBI Bacterial and Euryarchaeota completed genomes
Version 3 2014-05-12, 16:46
Version 2 2014-05-12, 16:46
Version 1 2014-05-10, 18:33
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posted on 2014-05-12, 16:46 authored by Ara KooserAra KooserApril 2014, NCBI Bacterial and Euryarchaeota completed genomes correlation. Current data set shows a correleation of 0.62 between GC content and genome size. The correlation is more than 0 by a probability of 1. Tthe 95% CI is between 0.59 and 0.64.
This a continuation of documenting GC content and genome size.
The R script that generated this analysis is available here:
https://github.com/bioinfonm/2ndmeta/blob/master/R%20Scripts/gc%20content%20genome%20size/gc%20content%20genome%20size%20bacteria.R
The raw data is available from NCBI here:
ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/prokaryotes.txt
Bayesian First Aid package is available here:
https://github.com/rasmusab/bayesian_first_aid
