Avocado Transcriptome Assembly

Version 2 2019-06-19, 14:12

Version 1 2019-06-14, 11:39

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posted on 2019-06-19, 14:12 authored by Tinashe ChabikwaTinashe Chabikwa, Francois Barbier, Milos Tanurdzic, Christine Beveridge

Avocado transcriptome assembly from pooled leaf, stem, bud, root, floral and fruit tissue. Using normalized cDNA libraries, we generated comprehensive RNA-Seq datasets using the Illumina NextSeq 500 platform. 63420 of avocado unigenes respectively were generated and functionally annotated using a combination of de novo transcriptome assembly, redundancy reduction and Basic Local Alignment Search Tool (BLAST) searches to the Universal Protein Resource UniProtKB/Swiss-Prot database.

Funding

This work was financially supported by the Australian Research Council, the Queensland Government and the Horticulture Innovation Australia Limited.

ARC Laureate Fellowship FL180100139

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Avocado De Novo Transcriptomes gene discovery normalized libraries RNA-Sequencing Plant Cell and Molecular Biology Plant Developmental and Reproductive Biology

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