Version 2 2021-01-12, 01:33Version 2 2021-01-12, 01:33
Version 1 2020-04-15, 08:38Version 1 2020-04-15, 08:38
dataset
posted on 2021-01-12, 01:33authored byThe Hospital for Tropical Diseases, Ho Chi Minh City
Updated on 12th January 2021
This update fixes inaccurate estimations of the proportion of non-susceptible isolates of E. coli and K. pneumoniae
for ampicillin (page 9-10 in the AMR surveillance
report) in AMASS 1.0. The updated AMR surveillance report and output
files were
generated by AMASS 1.1 using the same data sets and data dictionary
files. AMASS 1.1 (figshare link
https://figshare.com/articles/dataset/AMASS_zip/7763330) fixes a typo in
the R code (z_Rcode.R file) of the AMASS 1.0 that caused the
inaccurate estimations.
AutoMated tool for Antimicrobial resistance Surveillance System (AMASS) was developed as an offline, open-access and easy-to-use application that allows a hospital to perform data analysis independently and generate isolate-based and sample-based surveillance reports stratified by infection origin from routinely collected electronic databases. AMASS performs data analysis and generates reports automatically. The application can be downloaded from https://www.amass.website
This is a repository of the files for the Hospital for Tropical Diseases. The attached three files are: 1) The AMR surveillance report automatically generated from AMASS using hospital admission and microbiology data of the Hospital for Tropical Diseases in Vietnam 2) Aggregated summary data in .csv format automatically generated from AMASS 3) Data dictionary for microbiology data file of the Hospital for Tropical Diseases (configured by the hospital to be used with the AMASS application)
Please note that the two data dictionary files can be re-used with the data files of the hospital in the future in cases when variables names and values in the raw data remained unchanged.
Funding
Epidemiology and health burdens of antimicrobial resistant bacterial infection in Southeast Asia and impact of antibiotic use on patient survival