AA_anvio_order.faa (403.57 kB)

Amino acid alignment from PhyloSift to order genomes in Anvi'o

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posted on 2020-01-25, 01:57 authored by Laetitia WilkinsLaetitia Wilkins

Genomes in the pangenome of Anvi’o were ordered based on a marker gene tree. This tree was built in PhyloSift version 1.0.1 with its updated markers database (version 4) for the alignment. We used RAxML version 8.2.10 on the CIPRES web server.

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phylogenetic tree inference Amino Acid alignment Lonepinella koalarum KOALA study Veterinary Immunology Conservation and Biodiversity Evolutionary Biology

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MIT

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